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Accounting Firms for Ecommerce Businesses

Ecommerce accounting isn’t traditional accounting. You’re managing multiple storefronts, thousands of transactions, complex inventory, and ever-changing sales tax rules. This page features CPAs and accounting firms that specialize in ecommerce businesses—people who actually understand what it’s like to run Shopify stores, Amazon FBA brands, and DTC businesses with complex tech stacks. Let them help you streamline your books, stay compliant, and make smarter financial decisions as you grow. Need to outsource something else? Search for proactivefinancial advisorsandfractional CFOson Sam’s List too. Make sure to check the reviews, it’s one of the most important parts of your vetting process!

Featured Accountants

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"I own a number of small businesses and have a rather complicated tax return... CPA on Fire has been wonderful in helping me grow and strategize over the years. They are talented, patient, and I trust them. Highly recommended."
Fiat Finance | Advisory Services, Bookkeeping, Fractional CFO Services
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3 Client Reviews

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"Kaley Pate at Fiat Finance has been incredible to work with. Communicative, thorough and quick. I can't recommend highly enough!"
Nimbl | Advisory Services, Bookkeeping, Fractional CFO Services
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25 Client Reviews

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"Nimbl works at holding the sacredness of trust carefully in how they prepare, follow through, and reconcile perceived or real discrepancies. They provide us peace of mind, day-to-day, and a supportive perspective of the future enabling us to prepare and position ourselves to make the most of every opportunity. They are high-quality people who demonstrate proficiency and competency in their work and utilize processes that make it predictable. We enjoy connecting them with other people because we know that they will help make their life, business and future better."

Accountants

Builders Tax Group, LLC | Advisory Services, Bookkeeping, Fractional CFO Services
Construction is a tough business. It's even tougher when you:
-Pay too much in taxes
-Lack the financial insights needed to make decisions
-Waste valuable time DIY-ing your books and records

We help contractors simplify their finances, maximize their profits, and free up their time.
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Why Work with an Ecommerce Accountant?

Ecommerce isn’t your average business model—and it comes with complex financial challenges. From managing platform integrations like Shopify and Amazon to tracking inventory, COGS, and multi-state sales tax, ecommerce accounting is its own niche.
A specialized ecommerce accountant can help with:

Accurate inventory tracking and real-time COGS

Reconciling revenue across multiple sales channels

Navigating sales tax compliance in every state

Setting up software integrations like A2X, QuickBooks, and Xero

Forecasting profit margins and cash flow with ecommerce KPIs

Instead of explaining your business model, you’ll get someone who already gets it—and is ready to help you grow.

FrequentlyAsked Questions

What does an ecommerce accountant do?

Ecommerce accountants specialize in helping online businesses manage multi-channel revenue, reconcile accounts, prepare financial reports, handle inventory, ensure sales tax compliance, and provide insights to improve cash flow and profitability.

How do I find an ecommerce accountant?

You can find an ecommerce accountant through specialized directories like Sam’s List that vet accountants based on ecommerce experience. Look for professionals familiar with your selling platforms and accounting tools.

What is the best accounting method for ecommerce businesses?

Accrual accounting is usually preferred for ecommerce businesses. It provides a clearer picture of your financial health by recording income and expenses when they’re earned or incurred—not just when cash changes hands.

What is ecommerce bookkeeping?

Ecommerce bookkeeping involves recording all transactions from your online store(s), reconciling payment processors, tracking returns, monitoring inventory levels, calculating COGS, and managing sales tax liabilities.

Does Shopify handle accounting?

Shopify doesn’t provide built-in accounting software, but it integrates seamlessly with platforms like QuickBooks, Xero, and A2X to automate financial tracking and reporting.

What’s the best accounting software for ecommerce?

Popular options include:

A2X (best for Amazon, Shopify, Etsy)

QuickBooks Online (versatile and widely used)

Xero (great for small businesses with global needs)

Zoho Books (budget-friendly)

FreshBooks (for service-based ecommerce)

How do I hire an accountant for my ecommerce business?

Start by identifying your business needs (e.g., tax prep, inventory management, platform integrations). Then, use directories like Sam’s List to find vetted accountants who specialize in ecommerce.

Not sure who’s right for your ecommerce business? Answer a few quick questions, and we’ll introduce you to someone who fits.

Sam’s List is a directory for exploring accountants, bookkeepers, fractional CFOs, financial advisors, and wealth managers. We do not provide financial, investment, tax, or legal advice, nor do we recommend or endorse any specific professional. Some professionals participate in paid programs for additional visibility or leads. Users should independently verify any professional before engaging their services. Learn more in ourTerms of Service.
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