Accounting Firms for Ecommerce Businesses
Ecommerce accounting isn’t traditional accounting. You’re managing multiple storefronts, thousands of transactions, complex inventory, and ever-changing sales tax rules. This page features CPAs and accounting firms that specialize in ecommerce businesses—people who actually understand what it’s like to run Shopify stores, Amazon FBA brands, and DTC businesses with complex tech stacks. Let them help you streamline your books, stay compliant, and make smarter financial decisions as you grow. Need to outsource something else? Search for proactivefinancial advisorsandfractional CFOson Sam’s List too. Make sure to check the reviews, it’s one of the most important parts of your vetting process!
Featured Accountants
1 Client Reviews
"without a doubt 💯 Worked together for 2-3 years. Great service. Organized. Responsive. Knowledgeable. Always learning and sharing new info!"
2 Client Reviews
"Fantastic team at Anomaly - Been a client for years and this is the ONLY place where you get CPA brainpower and legal advice IN ONE PLACE. Before working with Anomaly about something complex, the response from my accountant was "speak to your attorney", who in turn would say "we should hop onto a call with your CPA".
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
4 Client Reviews
"I'm working with whitney and she's been very helpful, fast with responses, detailed and able to resolve any issue I've had"
Accountants
"Working with Steady Co has been one of the best decisions I’ve made for my business in 2025. Their team is organized, communicative, and consistently goes above and beyond. They’ve helped me stay on top of my books, better understand my cash flow, and make smarter financial decisions. I truly feel like they are a partner in my growth—not just a service provider."
4 Client Reviews
"I'm working with whitney and she's been very helpful, fast with responses, detailed and able to resolve any issue I've had"
2 Client Reviews
"Fantastic team at Anomaly - Been a client for years and this is the ONLY place where you get CPA brainpower and legal advice IN ONE PLACE. Before working with Anomaly about something complex, the response from my accountant was "speak to your attorney", who in turn would say "we should hop onto a call with your CPA".
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
1 Client Reviews
"without a doubt 💯 Worked together for 2-3 years. Great service. Organized. Responsive. Knowledgeable. Always learning and sharing new info!"
Showing 4 of 4 results
Why Work with an Ecommerce Accountant?
Ecommerce isn’t your average business model—and it comes with complex financial challenges. From managing platform integrations like Shopify and Amazon to tracking inventory, COGS, and multi-state sales tax, ecommerce accounting is its own niche.
A specialized ecommerce accountant can help with:
Accurate inventory tracking and real-time COGS
Reconciling revenue across multiple sales channels
Navigating sales tax compliance in every state
Setting up software integrations like A2X, QuickBooks, and Xero
Forecasting profit margins and cash flow with ecommerce KPIs
Instead of explaining your business model, you’ll get someone who already gets it—and is ready to help you grow.
A specialized ecommerce accountant can help with:
Accurate inventory tracking and real-time COGS
Reconciling revenue across multiple sales channels
Navigating sales tax compliance in every state
Setting up software integrations like A2X, QuickBooks, and Xero
Forecasting profit margins and cash flow with ecommerce KPIs
Instead of explaining your business model, you’ll get someone who already gets it—and is ready to help you grow.
FrequentlyAsked Questions
What does an ecommerce accountant do?
Ecommerce accountants specialize in helping online businesses manage multi-channel revenue, reconcile accounts, prepare financial reports, handle inventory, ensure sales tax compliance, and provide insights to improve cash flow and profitability.
How do I find an ecommerce accountant?
You can find an ecommerce accountant through specialized directories like Sam’s List that vet accountants based on ecommerce experience. Look for professionals familiar with your selling platforms and accounting tools.
What is the best accounting method for ecommerce businesses?
Accrual accounting is usually preferred for ecommerce businesses. It provides a clearer picture of your financial health by recording income and expenses when they’re earned or incurred—not just when cash changes hands.
What is ecommerce bookkeeping?
Ecommerce bookkeeping involves recording all transactions from your online store(s), reconciling payment processors, tracking returns, monitoring inventory levels, calculating COGS, and managing sales tax liabilities.
Does Shopify handle accounting?
Shopify doesn’t provide built-in accounting software, but it integrates seamlessly with platforms like QuickBooks, Xero, and A2X to automate financial tracking and reporting.
What’s the best accounting software for ecommerce?
Popular options include:
A2X (best for Amazon, Shopify, Etsy)
QuickBooks Online (versatile and widely used)
Xero (great for small businesses with global needs)
Zoho Books (budget-friendly)
FreshBooks (for service-based ecommerce)
How do I hire an accountant for my ecommerce business?
Start by identifying your business needs (e.g., tax prep, inventory management, platform integrations). Then, use directories like Sam’s List to find vetted accountants who specialize in ecommerce.
Not sure who’s right for your ecommerce business? Answer a few quick questions, and we’ll introduce you to someone who fits.
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