Accounting Firms for Ecommerce Businesses
Ecommerce accounting isn’t traditional accounting. You’re managing multiple storefronts, thousands of transactions, complex inventory, and ever-changing sales tax rules. This page features CPAs and accounting firms that specialize in ecommerce businesses—people who actually understand what it’s like to run Shopify stores, Amazon FBA brands, and DTC businesses with complex tech stacks. Let them help you streamline your books, stay compliant, and make smarter financial decisions as you grow. Need to outsource something else? Search for proactivefinancial advisorsandfractional CFOson Sam’s List too. Make sure to check the reviews, it’s one of the most important parts of your vetting process!
Featured Accountants
1 Client Reviews
"without a doubt 💯 Worked together for 2-3 years. Great service. Organized. Responsive. Knowledgeable. Always learning and sharing new info!"
3 Client Reviews
"Working with CPA on Fire has been a game-changer. Their team is responsive, strategic, and truly understands the needs of growing businesses. The fractional CFO support and personalized tax planning have added real value and peace of mind."
2 Client Reviews
"Fantastic team at Anomaly - Been a client for years and this is the ONLY place where you get CPA brainpower and legal advice IN ONE PLACE. Before working with Anomaly about something complex, the response from my accountant was "speak to your attorney", who in turn would say "we should hop onto a call with your CPA".
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
Accountants
22 Client Reviews
"Chase was invaluable in providing me with the financial tools and information I needed to make a big decision for my company. It was helpful to see the numbers, but he went beyond that by guiding me through the potential outcomes and responding to all my “what-if” questions."
11 Client Reviews
"The Steady Co team has been outstanding. They’ve streamlined and automated many of our A/P processes that used to take up an enormous amount of time. On top of that, they’ve taken the burden of bookkeeping completely off our plate, which has allowed me to stay focused on growing the business. I’m grateful to have such a reliable, dedicated team in the trenches with us."
4 Client Reviews
"I'm working with whitney and she's been very helpful, fast with responses, detailed and able to resolve any issue I've had"
3 Client Reviews
"Working with CPA on Fire has been a game-changer. Their team is responsive, strategic, and truly understands the needs of growing businesses. The fractional CFO support and personalized tax planning have added real value and peace of mind."
2 Client Reviews
"Fantastic team at Anomaly - Been a client for years and this is the ONLY place where you get CPA brainpower and legal advice IN ONE PLACE. Before working with Anomaly about something complex, the response from my accountant was "speak to your attorney", who in turn would say "we should hop onto a call with your CPA".
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
Anomaly brings it all together - like it should be!!!
Brilliant team and terrific insights."
2 Client Reviews
"I have found the overall service invaluable to the success of my business. Highly recommend the team at BK60."
1 Client Reviews
"without a doubt 💯 Worked together for 2-3 years. Great service. Organized. Responsive. Knowledgeable. Always learning and sharing new info!"
Scale confidently – our clients see a 313% higher survival rate.
Showing 8 of 8 results
Why Work with an Ecommerce Accountant?
Ecommerce isn’t your average business model—and it comes with complex financial challenges. From managing platform integrations like Shopify and Amazon to tracking inventory, COGS, and multi-state sales tax, ecommerce accounting is its own niche.
A specialized ecommerce accountant can help with:
Accurate inventory tracking and real-time COGS
Reconciling revenue across multiple sales channels
Navigating sales tax compliance in every state
Setting up software integrations like A2X, QuickBooks, and Xero
Forecasting profit margins and cash flow with ecommerce KPIs
Instead of explaining your business model, you’ll get someone who already gets it—and is ready to help you grow.
A specialized ecommerce accountant can help with:
Accurate inventory tracking and real-time COGS
Reconciling revenue across multiple sales channels
Navigating sales tax compliance in every state
Setting up software integrations like A2X, QuickBooks, and Xero
Forecasting profit margins and cash flow with ecommerce KPIs
Instead of explaining your business model, you’ll get someone who already gets it—and is ready to help you grow.
FrequentlyAsked Questions
What does an ecommerce accountant do?
Ecommerce accountants specialize in helping online businesses manage multi-channel revenue, reconcile accounts, prepare financial reports, handle inventory, ensure sales tax compliance, and provide insights to improve cash flow and profitability.
How do I find an ecommerce accountant?
You can find an ecommerce accountant through specialized directories like Sam’s List that vet accountants based on ecommerce experience. Look for professionals familiar with your selling platforms and accounting tools.
What is the best accounting method for ecommerce businesses?
Accrual accounting is usually preferred for ecommerce businesses. It provides a clearer picture of your financial health by recording income and expenses when they’re earned or incurred—not just when cash changes hands.
What is ecommerce bookkeeping?
Ecommerce bookkeeping involves recording all transactions from your online store(s), reconciling payment processors, tracking returns, monitoring inventory levels, calculating COGS, and managing sales tax liabilities.
Does Shopify handle accounting?
Shopify doesn’t provide built-in accounting software, but it integrates seamlessly with platforms like QuickBooks, Xero, and A2X to automate financial tracking and reporting.
What’s the best accounting software for ecommerce?
Popular options include: A2X (best for Amazon, Shopify, Etsy)
QuickBooks Online (versatile and widely used)
Xero (great for small businesses with global needs)
Zoho Books (budget-friendly)
FreshBooks (for service-based ecommerce)
QuickBooks Online (versatile and widely used)
Xero (great for small businesses with global needs)
Zoho Books (budget-friendly)
FreshBooks (for service-based ecommerce)
How do I hire an accountant for my ecommerce business?
Start by identifying your business needs (e.g., tax prep, inventory management, platform integrations). Then, use directories like Sam’s List to find vetted accountants who specialize in ecommerce.
Not sure who’s right for your ecommerce business? Answer a few quick questions, and we’ll introduce you to someone who fits.
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