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Best Ecommerce Accounting Software in California: A 2025 Guide for Smart Sellers

Published on September 18, 2024
Cover image of post "Best Accounting Software for Ecommerce in California (2025 Guide)"

TL;DR— Choosing the right ecommerce accounting software is essential for online sellers inCaliforniaand beyond. This guide covers top tools likeQuickBooks,Xero, andZoho Books, plus how to match with vetted ecommerce accountants viaSam's List. Manage cash flow, inventory, taxes, and scaling with confidence.

Running an e-commerce business is exciting, but it comes with financial challenges. One of the biggest issues is managing cash flow. In fact, 82% of businesses fail because they cannot control their cash flow.

Understanding where your money is at any given moment is crucial for an online store, where sales can spike or dip unexpectedly.

Accounting software makes a real difference. They give you a clear picture of your finances in real-time. These tools help you stay on top of your cash flow, making it easier to decide when to reinvest in your business, how much inventory to hold, and when to grow.

In this article, we'll break down the topaccounting software for ecommerceand share expert tips for sellers inCalifornia.

Explore vetted ecommerce accountants on Sam’s List


California Sales Tax Tip

In California, remote sellers must collect and remit sales tax if their annual sales exceed $500,000 in the state.This includes ecommerce businesses operating from out-of-state with significant California-based sales. Learn more via theCalifornia Department of Tax and Fee Administration (CDTFA).


FAQs for Ecommerce Accounting in California

What is ecommerce accounting?

It’s the process of managing the financial data, reporting, and compliance of your online store—including sales, expenses, taxes, and inventory.

Why do I need an ecommerce accountant in California?

Local accountants understandCalifornia tax rules, and how to optimize for state-specific compliance—like collecting sales tax even without a physical store.

What software should I use?

QuickBooks Online,Xero, andA2Xare most popular. They integrate well with major ecommerce platforms.

How do I handle sales tax for multiple states?

Use tax automation tools likeAvalaraorTaxJar, which calculate and file taxes based on customer location and economic nexus rules.

How can Sam’s List help?

Sam’s Listmatches ecommerce businesses with vetted accountants who understand Shopify, Amazon, and multichannel retail—and they offer both local (California) and national pros.

How can ecommerce accounting software help me manage sales tax?

Ecommerce accounting software helps you manage sales tax by automatically calculating the correct tax rates based on the location of your customers and the products they purchase. It tracks sales tax collected across different states or countries, ensuring you comply with local regulations. The software can also generate sales tax reports, making filing your taxes accurately and on time easier.

What integrations should I look for in ecommerce accounting software?

Look for e-commerce accounting software that integrates seamlessly with your e-commerce platforms, such as Shopify, Amazon, or WooCommerce. Additionally, ensure it connects with payment gateways like PayPal or Stripe and third-party tools, such as inventory management systems and CRM platforms. These integrations streamline data transfer, reduce manual entry, and provide a complete financial overview.

Can I give my accountant or bookkeeper access to my ecommerce accounting software?

Yes, most ecommerce accounting software allows you to grant your accountant or bookkeeper access. You can usually set different permission levels, ensuring they can view or edit only the information necessary for their work. This feature simplifies collaboration and ensures your financial records are updated.

How does ecommerce accounting software help me make better business decisions?

Ecommerce accounting software provides real-time financial data and detailed reports, giving insights into your revenue, expenses, and cash flow. With this information, you can identify trends, monitor profitability, and make informed decisions about inventory management, pricing strategies, and business expansion, ultimately helping you optimize your operations and grow your business.


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Author: Kimi, Co-founder of Sam's List

Kimi writes about what she's learning while building Sam's List and shares honest takeaways from her conversations with accountants and financial advisors across the country. None of this is financial advice—just the stuff most people wish someone told them sooner.


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